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Daniel T.S. Pak Associate Professor of Pharmacology Pak Lab Website |
My laboratory is interested in the molecular changes that occur at synapses in response to experience. We have focused on proteins associated (either directly or as downstream targets) with the NMDA subtype of glutamate receptor, an important mediator of many forms of synaptic plasticity and learning in mammals. We utilize a combination of approaches ranging from molecular biology and biochemistry to cell biology, imaging, and mouse genetics to address the following aspects of synaptic modification.
I. Dendritic spine size, motility, and morphology
Spines are small, actin-rich dendritic protrusions that form the sites of excitatory synaptic input in the mammalian CNS. Spines uniquely exhibit morphological rearrangement in response to activity and therefore have been proposed to represent structural correlates of long-term information storage. We have identified a key actin regulatory protein, SPAR, which associates with NMDA receptors and promotes dramatic enlargement of dendritic spines. We are currently testing the hypothesis that SPAR is required for activity-dependent growth of spines, and that this augmentation is important for memory formation or stabilization in vivo.
II. Regulation of synapse number
Because strength of synaptic transmission is intimately related to the density of synapses on a neuron, synaptogenesis and synapse loss are both expected to play important roles in controlling activity levels. We are studying an activity-inducible serine-threonine kinase of the polo family, SNK, which triggers synapse elimination via the phosphorylation and ubiquitin-mediated degradation of key postsynaptic proteins, including SPAR. We are generating mutants in SNK to determine the involvement of this kinase in various paradigms of synapse turnover: during neurodevelopment (e.g. “pruning�), learning (information editing), and in neurodegenerative disorders that are often characterized by excessive synapse loss.
III. Synaptic targeting of signaling enzymes
It is well established that protein kinases including protein kinase C (PKC) and cAMP-dependent protein kinase (PKA) play critical roles in NMDA receptor-dependent synaptic plasticity. However, the organization of these signaling microdomains remains unclear, particularly at glutamatergic synapses. Using yeast two-hybrid and biochemical approaches we are undertaking the identification of novel scaffolding and targeting infrastuctures for PKC and cAMP metabolic/responsive enzymes situated in molecular proximity to the NMDA receptor.
III. Activity-dependent changes in synaptic protein composition
A long-term interest of the lab is to understand at the proteomic level how synaptic stimulation alters synapse content. Following chemical bath applications to mimic particular patterns of synaptic activity, we are using combined biochemical purification of postsynaptic densities and microarray analysis to characterize two aspects of synaptic plasticity: the ensemble of proteins that rapidly translocates into synapses and may contribute to short-term plasticity, as well as the de novo gene expression that occurs on a longer timecourse that contributes to long-lasting synaptic modifications.
Selected Publications:
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Lee KJ, Queenan BN, Rozeboom AM, Bellmore R, Lim ST, Vicini S, Pak DT. Mossy fiber-CA3 synapses mediate homeostatic plasticity in mature hippocampal neurons. Neuron. 77:99-114, 2013
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Shin SM, Zhang N, Hansen J, Gerges NZ, Pak DT, Sheng M, Lee SH. GKAP orchestrates activity-dependent postsynaptic protein remodeling and homeostatic scaling.. Nat Neurosci. 15:1655-1666, 2012
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Queenan BN, Lee KJ, Pak DT. Wherefore art thou, homeo(stasis)? Functional diversity in homeostatic synaptic plasticity. Neural Plasticity. ID718203. 2012
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Dumanis SB, Chamberlain KA, Sohn YJ, Lee YJ, Guenette SY, Suzuki T, Mathews PM, Pak DT, Rebeck GW, Suh YH, Park HS, Hoe HS. FE65 as a link between VLDLR and APP to regulate their trafficking and processing. Mol Neurodegener. 7(1):9. 2012
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Rozeboom AM, Pak DT. Identification and functional characterization of polo-like kinase 2 autoregulatory sites. Neuroscience. 202:147-57. 2012
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Babus LW, Little EM, Keenoy KE, Minami SS, Chen E, Song JM, Caviness J, Koo SY, Pak DT, Rebeck GW, Turner RS, Hoe HS. Decreased dendritic spine density and abnormal spine morphology in Fyn knockout mice. Brain Res. 1415:96-102, 2011
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Rogers JT, Rusiana I, Trotter J, Zhao L, Donaldson E, Pak DT, Babus LW, Peters M, Banko JL, Chavis P, Rebeck GW, Hoe HS, Weeber EJ. Reelin supplementation enhances cognitive ability, synaptic plasticity, and dendritic spine density. Learn Mem. 18(9):558-64, 2011
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Lee KJ, Hoe HS, Pak DT. Plk2 Raps up Ras to subdue synapses. Small Gtpases. 2(3):162-166, 2011
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Lee KJ, Lee Y, Rozeboom A, Lee JY, Udagawa N, Hoe HS, Pak DT. Requirement for plk2 in orchestrated ras and rap signaling, homeostatic structural plasticity, and memory. Neuron. 69:957-73, Mar 10 2011.
Dumanis SB, Cha HJ, Song JM, Trotter JH, Spitzer M, Lee JY, Weeber EJ, Turner RS, Pak DT, Rebeck GW, Hoe HS. ApoE receptor 2 regulates synapse and dendritic spine formation. PLoS One. 6:e17203, Feb 15 2011.
Hoe HS, Lee HK, Pak DT. The Upside of APP at Synapses.CNS Neurosci Ther. 2010 Dec 27.[Epub ahead of print]
Evers DM, Matta JA, Hoe HS, Zarkowsky D, Lee SH, Isaac JT, Pak DT. Plk2 attachment to NSF induces homeostatic removal of GluA2 during chronic overexcitation. Nat Neurosci
Hoe HS, Lee KJ, Carney RS, Lee J, Markova A, Lee JY, Howell BW, Hyman BT, Pak DT, Bu G, Rebeck GW: Interaction of reelin with amyloid precursor protein promotes neurite outgrowth. J Neurosci. 29:7459-73, 2009
Lu XJ, Chen XQ, Weng J, Zhang HY, Pak DT, Luo JH, Du JZ: Hippocampal SPAR induces enhancement of learning and memory in postnatally hypoxia-exposed mice. Neuroscience. May 11, 2009
Hoe HS, Lee JY, Pak DT: Combinatorial morphogenesis of dendritic spines and filopodia by SPAR and alpha-actinin2. Biochem Biophys Res Commun. 384:55-60, 2009
Hoe HS, Fu Z, Makarova A, Lee JY, Lu C, Feng L, Pajoohesh-Ganji A, Matsuoka Y, Hyman BT, Ehlers MD, Vicini S, Pak DT, Rebeck GW: The effects of amyloid precursor protein on postsynaptic composition and activity. J Biol Chem. 284:8495-506, 2009
Cartagena CM, Ahmed F, Burns MP, Pajoohesh-Ganji A, Pak DT, Faden AI, Rebeck GW: Cortical injury increases cholesterol 24S hydroxylase (Cyp46) levels in the rat brain. J Neurotrauma. 25:1087-98, 2008
Seeburg DP, Feliu-Mojer M, Gaiottino J, Pak DT, Sheng M: Critical role of CDK5 and Polo-like kinase 2 in homeostatic synaptic plasticity during elevated activity. Neuron. 58:571-83, 2008
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